Thank you all for the advice, I agree with everything you guys said. My wife doesn't though. 
I didn't takt the time to read every single post, but to offer my general advice from wife's point of view on the situation;
My husband and I got married while I was in power school and I became pregnant shortly there after and he began Power school. After consideration (and the fact that ETs generally make more money than MMs) I got out of the Navy to care for the baby. Whether or not it is a good idea for you is up to you and your wife and how much she understands the Navy. Being in made it easier to understand (although still hormonal) where he was coming from in a lot of aspects of being pregnant while my husband was in the pipeline. IT IS NO WHERE NEAR PEACHES AND CREAM!! It's also not all horrible if you have a strong wife. Power School and Prototype (especially prototype) are now more recently consider the "ultimate test" on the strength of your marriage because even without a child, the hours, the studying, the rotating shift work is A LOT to adjust to for a new to the navy world wife. I myself, have done a lot of counseling with both "wives to the pipeline" pregnant, with children, and without and it's safe to say all would agree PROTOTYPE is the worst! It's not very family oriented, and is probably the toughest leg (family wise) of the pipeline both as a student and a SPU. I had one son while my husband was a student and another while he was a SPU and if I had decided again, during prototype is NOT A GOOD IDEA. Even as one of the top students in his classes, the Hours and shifts are just hard for a wife to adjust to, especially a pregnant one because it is really a wear on your body no matter how much you try and avoid it. There were times when my husband qualified everything over a month early as a student and spent the next month cake-walking almost always home to where I didn't see him my entire 8th month of pregnancy as a top instructor except for maybe 15min a day between sleeping and going to work. My suggestion is to wait until after prototype bc that place is a test of strengths on any marriage without the worries of pregnancy and children and no matter how ready or it you or your wife may feel, that place is real good at throwing curve balls. Then you and your wife should sit and evaluate the best time for both of you after you are assigned your next command (or picked up staff if that is what you wish) and see what kind of boat it will be and the type of schedule you may be on.
And Yes, Boomers are quite nice!
Best of luck to you and the misses!! feel free to have her ask anything she may be wondering from the wives side